LENGTH	2416
LCA	Viruses::ssRNA viruses::ssRNA positive-strand viruses, no DNA stage::Togaviridae::Alphavirus
NBSEQ	166
KEYWORDS:
virus	157
polyprotein	149
structural	74
nonstructural	74
non	73
encephalitis	45
equine	45
precursor	37
Chikungunya	26
Venezuelan	26
P1234	19
Sindbis	14
Eastern	13
protein	11
Forest	10
putative	9
alphavirus	9
Mayaro	7
Madariaga	7
Semliki	7
nsP1234	7
disease	6
Western	6
Salmon	6
pancreas	6
like	4
River	4
Getah	4
Ndumu	4
Ross	4
Norwegian	4
salmonid	4
Highlands	3
nsP123	3
RNA	2
seal	2
Wenling	2
elephant	2
Aura	2
Bebaru	2
Barmah	2
Middelburg	2
Southern	2
Whataroa	2
YN87448	2
Eilat	2
nsp1	2
nsP4	2
hypothetical	1
polymerase	1
dependent	1
truncated	1
subtype	1
Tai	1
variant	1
short	1
fish	1
Rio	1
123	1
Fort	1
Una	1
Babanki	1
Buggy	1
Creek	1
Onyong	1
nyong	1
1234	1
readthrough	1
Ockelbo	1
Tonate	1
Negro	1
Morgan	1
Mwinilunga	1
Mucambo	1
Trocara	1
Salmonid	1
Polyprotein	1
Cabassou	1
Pixuna	1
Mosso	1
das	1
Pedras	1
hagfish	1
nsp4	1
ns1	1
ns4	1
Kyzylagach	1
Nsp1	1
p270	1
p1234	1
p123	1
ns123	1
P123	1
Everglades	1
Igbo	1
Ora	1
SEQUENCES:
acc|GENBANK|ABP88821.1|NEIGHBOR|EF210157|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|ACD93607.1|NEIGHBOR|EU564334|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AZF99251.1|GENBANK|MH987779|nonstructural polyprotein [Ross River virus]
acc|GENBANK|ALF40128.1|NEIGHBOR|KR132531|non-structural polyprotein precursor [Madariaga virus]
acc|GENBANK|ALE15083.1|NEIGHBOR|KR260717|polyprotein [Eastern equine encephalitis virus]
acc|GENBANK|ALE15084.1|NEIGHBOR|KR260717|polyprotein [Eastern equine encephalitis virus]
acc|GENBANK|ALE15112.1|NEIGHBOR|KR260736|polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|ALE15113.1|NEIGHBOR|KR260736|polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|ALE15115.1|NEIGHBOR|KR260737|polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|AKS40069.1|NEIGHBOR|KR264949|structural polyprotein [Chikungunya virus]
acc|GENBANK|AQZ26872.1|NEIGHBOR|KY302801|non-structural polyprotein [Ross River virus]
acc|GENBANK|AAA47407.1|GENBANK|M20539|polyprotein [Ross River virus]
acc|GENBANK|AAA96972.1|NEIGHBOR|M69205|nonstructural polyprotein [Ockelbo virus]
acc|GENBANK|ATL75444.1|NEIGHBOR|MF741771|nonstructural polyprotein [Getah virus]
acc|GENBANK|AAM10628.1|NEIGHBOR|AF429428|nonstructural protein [Sindbis virus]
acc|GENBANK|AAM10629.1|NEIGHBOR|AF429428|nonstructural polyprotein [Sindbis virus]
acc|GENBANK|AAL47146.1|GENBANK|AF448535|nonstructural polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|AAL47150.1|GENBANK|AF448537|nonstructural polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|ABV68936.1|NEIGHBOR|EU015062|nonstructural polyprotein [Getah virus]
acc|GENBANK|AAK66989.1|GENBANK|AF375051|nonstructural polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|ANH58366.1|NEIGHBOR|KU355832|nonstructural protein [Chikungunya virus]
acc|GENBANK|ANI85398.1|GENBANK|KU365282|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AEQ61910.1|GENBANK|JF972635|non-structural polyprotein [Semliki Forest virus]
acc|GENBANK|AMQ76463.1|GENBANK|KU940226|nonstructural protein [Chikungunya virus]
acc|GENBANK|BBC18123.1|NEIGHBOR|LC259085|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AHY18671.1|GENBANK|KJ409555|nonstructural polyprotein [Highlands J virus]
acc|GENBANK|ALJ56198.1|NEIGHBOR|KT754168|nonstructural polyprotein [Mayaro virus]
acc|GENBANK|ALG64705.1|NEIGHBOR|KT818520|nonstructural polyprotein [Mayaro virus]
acc|GENBANK|ABL84686.1|NEIGHBOR|EF151502|nonstructural polyprotein [Eastern equine encephalitis virus]
acc|GENBANK|ABL84688.1|NEIGHBOR|EF151503|nonstructural polyprotein [Madariaga virus]
acc|GENBANK|AYV92026.1|GENBANK|MH708650|non-structural polyprotein [Salmon pancreas disease virus]
acc|GENBANK|AYV92028.1|GENBANK|MH708651|non-structural polyprotein [Salmon pancreas disease virus]
acc|GENBANK|AYV92030.1|GENBANK|MH708652|non-structural polyprotein [Salmon pancreas disease virus]
acc|GENBANK|AYV92033.1|GENBANK|MH708653|non-structural polyprotein [Salmon pancreas disease virus]
acc|GENBANK|ACT32134.1|NEIGHBOR|GQ227789|nonstructural polyprotein [Highlands J virus]
acc|GENBANK|AAA86133.1|NEIGHBOR|U38304|nonstructural polyprotein [Sindbis-like virus]
acc|GENBANK|AAA86135.1|NEIGHBOR|U38305|nonstructural polyprotein [Sindbis-like virus]
acc|GENBANK|AAD43358.1|NEIGHBOR|U55360|nonstructural polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|AAD43359.1|NEIGHBOR|U55362|nonstructural polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|BBC45634.1|GENBANK|LC361437|non-structural polyprotein [Mwinilunga alphavirus]
acc|GENBANK|CAB42822.1|GENBANK|AJ012631|nsP4 [Salmon pancreas disease virus]
acc|GENBANK|CAB62256.1|GENBANK|AJ251359|polyprotein nsP1234 [Semliki Forest virus]
acc|GENBANK|AIM46757.1|NEIGHBOR|KM115531|non-structural polyprotein [Middelburg virus]
acc|GENBANK|ARQ30114.1|GENBANK|KY026195|nsp1-3 [Mayaro virus]
acc|GENBANK|ARQ30115.1|GENBANK|KY026195|nsp4 [Mayaro virus]
acc|GENBANK|ARQ30129.1|GENBANK|KY026200|nsp1-3 [Mayaro virus]
acc|GENBANK|AND80849.1|NEIGHBOR|KX168429|non-structural polyprotein [Chikungunya virus]
acc|GENBANK|ABX38964.1|NEIGHBOR|EU244823|nonstructural polyprotein short variant [Chikungunya virus]
acc|GENBANK|AAM64226.1|NEIGHBOR|AY112987|non-structural polyprotein [Semliki Forest virus]
acc|GENBANK|AGN55418.1|NEIGHBOR|JX570540|non-structural polyprotein [Sindbis virus]
acc|GENBANK|AGO50115.1|GENBANK|JX644166|non structural polyprotein [Ndumu virus]
acc|GENBANK|AGO50121.1|GENBANK|JX644169|non structural polyprotein [Ndumu virus]
acc|GENBANK|AHL27150.1|NEIGHBOR|KF981618|ns1-ns4 protein precursor [Kyzylagach virus]
acc|GENBANK|AHM95190.1|NEIGHBOR|KJ013266|nonstructural polyprotein [Mayaro virus]
acc|GENBANK|AHW48358.1|NEIGHBOR|KJ659367|putative non-structural polyprotein precursor [Eastern equine encephalitis virus]
acc|GENBANK|CAA52868.2|GENBANK|X74892|nonstructural polyprotein [Western equine encephalitis virus]
acc|GENBANK|CAA75053.1|GENBANK|Y14761|putative RNA-dependent RNA polymerase [Semliki Forest virus]
acc|GENBANK|CAA76683.1|GENBANK|Y17207|polyprotein [Semliki Forest virus]
acc|GENBANK|CAD90833.1|NEIGHBOR|Z48163|non-structural polyprotein [Semliki Forest virus]
acc|GENBANK|ASM47536.1|GENBANK|KY704933|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|ASM47556.1|GENBANK|KY704943|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|ASM47564.1|GENBANK|KY704947|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AEX25333.1|GENBANK|JQ065885|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AEX25335.1|GENBANK|JQ065886|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AEX25339.1|GENBANK|JQ065888|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AEX25341.1|GENBANK|JQ065889|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AEX25343.1|GENBANK|JQ065890|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AYP19282.1|NEIGHBOR|MG865965|non-structural polyprotein [Getah virus]
acc|GENBANK|AYP19284.1|NEIGHBOR|MG865966|non-structural polyprotein [Getah virus]
acc|GENBANK|ALI88660.1|NEIGHBOR|KP842818|Nsp1-3 [Mayaro virus]
acc|GENBANK|AGE98148.1|NEIGHBOR|KC344431|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98150.1|NEIGHBOR|KC344432|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98164.1|NEIGHBOR|KC344440|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98166.1|NEIGHBOR|KC344441|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98180.1|NEIGHBOR|KC344448|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98236.1|NEIGHBOR|KC344476|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98289.2|NEIGHBOR|KC344503|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98297.2|NEIGHBOR|KC344507|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98323.1|NEIGHBOR|KC344520|non-structural polyprotein precursor P1234 [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98341.1|GENBANK|KC344529|putative non-structural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98342.1|GENBANK|KC344529|putative non-structural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98343.1|GENBANK|KC344530|putative non-structural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98344.1|GENBANK|KC344530|putative non-structural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98346.1|GENBANK|KC344531|putative non-structural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|AGE98348.1|GENBANK|KC344531|putative non-structural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|CAJ90487.1|NEIGHBOR|AM258993|non-structural polyprotein [Chikungunya virus]
acc|GENBANK|AGT42224.1|NEIGHBOR|KC122918|non-structural protein [Salmonid alphavirus subtype 3]
acc|GENBANK|AAA96653.1|GENBANK|J02246|nonstructural polyprotein [Middelburg virus]
acc|GENBANK|ADZ47898.1|GENBANK|JF272476|nsP4 protein [Chikungunya virus]
acc|GENBANK|AYM45057.1|GENBANK|MH229928|nonstructural polyprotein [Sindbis virus]
acc|GENBANK|AYV91725.1|GENBANK|MH238448|non-structural protein [Salmon pancreas disease virus]
acc|GENBANK|AAC83378.1|NEIGHBOR|AF103728|nonstructural polyprotein [Sindbis virus]
acc|GENBANK|AAC77465.1|NEIGHBOR|AF103734|p270 nonstructural polyprotein [Sindbis-like virus YN87448]
acc|GENBANK|AAC77464.1|NEIGHBOR|AF103734|nonstructural protein [Sindbis-like virus YN87448]
acc|GENBANK|AAU01395.1|GENBANK|AY604235|non-structural polyprotein [Norwegian salmonid alphavirus]
acc|GENBANK|AAU01397.1|GENBANK|AY604236|non-structural polyprotein [Norwegian salmonid alphavirus]
acc|GENBANK|AAU01399.1|GENBANK|AY604237|non-structural polyprotein [Norwegian salmonid alphavirus]
acc|GENBANK|AAU01401.1|GENBANK|AY604238|non-structural polyprotein [Norwegian salmonid alphavirus]
acc|GENBANK|ACN87268.1|GENBANK|FJ786260|nonstructural polyprotein [Western equine encephalitis virus]
acc|GENBANK|ACN87269.1|GENBANK|FJ786261|nonstructural polyprotein [Western equine encephalitis virus]
acc|GENBANK|ACN87271.1|GENBANK|FJ786263|nonstructural polyprotein [Western equine encephalitis virus]
acc|GENBANK|AKZ17164.1|NEIGHBOR|KT121582|nonstructural polyprotein readthrough protein [Sindbis virus]
acc|GENBANK|AKZ17165.1|NEIGHBOR|KT121582|nonstructural polyprotein [Sindbis virus]
acc|GENBANK|AGI74964.1|GENBANK|JX262386|nonstructural protein [Eastern equine encephalitis virus]
acc|GENBANK|AUO29121.1|NEIGHBOR|MG570148|non-structural polyprotein precursor [Madariaga virus]
acc|GENBANK|ASL24782.1|GENBANK|KX097986|nonstructural polyprotein [Chikungunya virus]
acc|REFSEQ|YP_008901141.1|REFSEQ|NC_018615|non-structural polyprotein precursor nsP1234 [Eilat virus]
acc|REFSEQ|YP_006732326.1|REFSEQ|NC_018615|non-structural polyprotein nsP123 [Eilat virus]
acc|REFSEQ|NP_597797.2|REFSEQ|NC_001786|non-structural polyprotein precursor nsP1234 [Barmah Forest virus]
acc|REFSEQ|NP_054023.1|REFSEQ|NC_001786|nonstructural polyprotein [Barmah Forest virus]
acc|REFSEQ|YP_009020570.1|REFSEQ|NC_023812|non-structural polyprotein precursor P1234 [Madariaga virus]
acc|REFSEQ|YP_008901140.1|REFSEQ|NC_016962|non-structural polyprotein precursor nsP1234 [Bebaru virus]
acc|REFSEQ|YP_005351238.1|REFSEQ|NC_016962|non structural polyprotein nsP123 [Bebaru virus]
acc|REFSEQ|YP_008888546.1|REFSEQ|NC_016961|non-structural polyprotein precursor nsP1234 [Whataroa virus]
acc|REFSEQ|YP_005351236.1|REFSEQ|NC_016961|non structural polyprotein nsP123 [Whataroa virus]
acc|REFSEQ|NP_041254.1|REFSEQ|NC_001512|hypothetical protein [Onyong-nyong virus]
acc|REFSEQ|NP_062879.1|REFSEQ|NC_001544|nonstructural polyprotein [Ross River virus]
acc|REFSEQ|NP_632021.2|REFSEQ|NC_003899|nonstructural polyprotein p1234 [Eastern equine encephalitis virus]
acc|REFSEQ|NP_632020.1|REFSEQ|NC_003899|nonstructural polyprotein p123 [Eastern equine encephalitis virus]
acc|REFSEQ|NP_632023.2|REFSEQ|NC_003900|Polyprotein 1 [Aura virus]
acc|REFSEQ|YP_008888544.1|REFSEQ|NC_016959|non-structural polyprotein precursor nsP1234 [Ndumu virus]
acc|REFSEQ|YP_008888545.1|REFSEQ|NC_016960|non-structural polyprotein precursor nsP1234 [Southern elephant seal virus]
acc|REFSEQ|YP_005351234.1|REFSEQ|NC_016960|non structural polyprotein ns123 [Southern elephant seal virus]
acc|REFSEQ|NP_040823.1|REFSEQ|NC_001449|non-structural polyprotein precursor P123 [Venezuelan equine encephalitis virus]
acc|REFSEQ|YP_003324587.1|REFSEQ|NC_013528|nonstructural polyprotein [Fort Morgan virus]
acc|REFSEQ|YP_009507794.1|REFSEQ|NC_038670|nonstructural polyprotein [Cabassou virus]
acc|REFSEQ|YP_009507796.1|REFSEQ|NC_038671|nonstructural polyprotein [Everglades virus]
acc|REFSEQ|YP_009507798.1|REFSEQ|NC_038672|nonstructural polyprotein [Mucambo virus]
acc|REFSEQ|YP_009507800.1|REFSEQ|NC_038673|nonstructural polyprotein [Pixuna virus]
acc|REFSEQ|YP_009507802.1|REFSEQ|NC_038674|nonstructural polyprotein [Rio Negro virus]
acc|REFSEQ|YP_009507804.1|REFSEQ|NC_038675|nonstructural polyprotein [Tonate virus]
acc|REFSEQ|YP_009508088.1|REFSEQ|NC_038857|nonstructural polyprotein [Mosso das Pedras virus]
acc|REFSEQ|YP_009333615.1|REFSEQ|NC_032681|non-structural polyprotein [Tai Forest alphavirus]
acc|GENBANK|AAM10974.1|GENBANK|AF492770|nonstructural polyprotein 1234 [Sindbis virus]
acc|GENBANK|AAM10975.1|GENBANK|AF492770|nonstructural polyprotein 123 [Sindbis virus]
acc|GENBANK|AEK21841.1|GENBANK|HQ848080|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AHL83668.1|NEIGHBOR|KJ469574|non-structural polyprotein precursor P1234 [Madariaga virus]
acc|GENBANK|AHL83698.1|NEIGHBOR|KJ469589|non-structural polyprotein precursor P1234 [Madariaga virus]
acc|GENBANK|AHL83794.1|NEIGHBOR|KJ469637|non-structural polyprotein precursor P1234 [Madariaga virus]
acc|GENBANK|CUS27893.1|NEIGHBOR|LN898098|truncated non-structural polyprotein [Chikungunya virus]
acc|GENBANK|AHI50298.1|GENBANK|KF872195|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AWQ38330.1|NEIGHBOR|MG761767|nonstructural polyprotein [Aura virus]
acc|GENBANK|AMN91474.1|NEIGHBOR|KU840306|non-structural polyprotein precursor P1234 [Eastern equine encephalitis virus]
acc|GENBANK|AVM87425.1|GENBANK|MG600126|nonstructural polyprotein [Wenling fish alphavirus]
acc|GENBANK|AVM87429.1|GENBANK|MG600128|nonstructural polyprotein [Wenling hagfish alphavirus]
acc|GENBANK|AAA67651.1|GENBANK|U01065|nonstructural polyprotein [Western equine encephalitis virus]
acc|GENBANK|ADZ04935.1|GENBANK|HM038418|non-structural polyprotein [Chikungunya virus]
acc|GENBANK|ADG95890.1|NEIGHBOR|HM045789|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|ADG95922.1|NEIGHBOR|HM045806|nonstructural polyprotein [Chikungunya virus]
acc|GENBANK|AFI61939.1|GENBANK|JN989957|non-structural polyprotein [Ndumu virus]
acc|GENBANK|AMT80011.1|NEIGHBOR|KX000076|non-structural polyprotein precursor P1234 [Eastern equine encephalitis virus]
acc|GENBANK|AMT80029.1|NEIGHBOR|KX000085|non-structural polyprotein precursor P1234 [Eastern equine encephalitis virus]
acc|GENBANK|AMT80101.1|NEIGHBOR|KX000121|non-structural polyprotein precursor P1234 [Eastern equine encephalitis virus]
acc|GENBANK|AMT80209.1|NEIGHBOR|KX000175|non-structural polyprotein precursor P1234 [Eastern equine encephalitis virus]
acc|GENBANK|AMT80247.1|NEIGHBOR|KX000194|non-structural polyprotein precursor P1234 [Eastern equine encephalitis virus]
acc|GENBANK|AVN98161.1|NEIGHBOR|MF409176|non-structural polyprotein [Igbo Ora virus]
acc|GENBANK|AVN98163.1|NEIGHBOR|MF409177|non-structural polyprotein [Sindbis virus]
acc|GENBANK|AAC19326.1|GENBANK|L00930|putative nonstructural polyprotein precursor [Venezuelan equine encephalitis virus]
acc|GENBANK|ACT75287.1|NEIGHBOR|GQ287646|nonstructural polyprotein [Western equine encephalitis virus]
acc|GENBANK|AEJ36223.1|NEIGHBOR|HM147984|non structural polyprotein [Babanki virus]
acc|GENBANK|AEJ36226.1|NEIGHBOR|HM147986|non structural polyprotein [Buggy Creek virus]
acc|GENBANK|AEJ36228.1|GENBANK|HM147988|non structural polyprotein [Highlands J virus]
acc|GENBANK|AEJ36234.1|GENBANK|HM147991|non structural polyprotein [Trocara virus]
acc|GENBANK|AEJ36236.1|GENBANK|HM147992|non structural polyprotein [Una virus]
acc|GENBANK|AAD14558.1|GENBANK|AF075255|nonstructural polyprotein [Venezuelan equine encephalitis virus]
acc|GENBANK|ACB12687.1|NEIGHBOR|EU350586|nonstructural polyprotein [Semliki Forest virus]
