LENGTH	380
LCA	Viruses::Riboviria::Orthornavirae::Pisuviricota::Pisoniviricetes::Nidovirales::Cornidovirineae::Coronaviridae
NBSEQ	160
KEYWORDS:
coronavirus	160
nucleocapsid	160
protein	1
family	1
effector	1
hopa1	1
KEYWORDS FROM SEQUENCES:
protein	134
nucleocapsid	132
coronavirus	103
bat	53
alphacoronavirus	39
feline	21
229e	19
human	17
virus	14
diarrhea	14
porcine	14
epidemic	14
related	10
phosphoprotein	6
2006	5
kenya	5
miniopterus	5
hipposideros	5
canine	5
nl63	5
chaerephon	4
ferret	4
2014	3
nucleoprotein	3
myotis	3
rhinolophus	3
camel	3
rat	3
kuhlii	3
shrew	3
jingmen	3
lucheng	3
wencheng	3
alphacov	3
eswatini	3
italy	2
dog	2
eptesicus	2
raccoon	2
rousettus	2
schreibersii	2
hku2	2
hku10	2
hku8	2
cov	2
2020	2
pumilus	2
megaderma	2
glycoprotein	1
2011	1
2015	1
2008	1
2003	1
fuscus	1
2000	1
mink	1
rodent	1
pipistrellus	1
affinis	1
scotophilus	1
aegyptiacus	1
mouse	1
ricketti	1
pomona	1
512	1
nld	1
tylonycteris	1
civet	1
hub2013	1
mops	1
condylurus	1
appalachian	1
206645	1
gz43	1
ky22	1
ky41	1
ghanakwam	1
ukma1	1
minacovirus	1
nt_4	1
hku32	1
cardioderma	1
ky43	1
ky27	1
ky33	1
lucifugus	1
hku33	1
btrf	1
btnv	1
sc2013	1
btmr	1
sax2011	1
3398	1
uu24	1
mimon	1
afronycteris	1
nana	1
bat77	1
bat143	1
fievel	1
plateatu	1
pika	1
p83	1
camel229e	1
chb25	1
bat180	1
hcqd	1
4e98	1
uu7	1
hku7	1
3363	1
uu40	1
plmg1	1
SEQUENCES:
acc|GENBANK|ABM64780.1|NEIGHBOR|EF185992|N protein [Porcine epidemic diarrhea virus]
acc|GENBANK|ABO88143.1|GENBANK|EF192157|nucleocapsid protein [Raccoon dog coronavirus GZ43/2003]
acc|GENBANK|ABQ57220.1|NEIGHBOR|EF203065|nucleocapsid phosphoprotein [Rhinolophus bat coronavirus HKU2]
acc|GENBANK|QQJ42202.1|GENBANK|MN482242|N protein [Bat coronavirus]
acc|GENBANK|QQJ42208.1|GENBANK|MN482243|N protein [Bat coronavirus]
acc|GENBANK|QHB49082.1|GENBANK|MN488618|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|QHB49083.1|GENBANK|MN488619|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|QHB49088.1|GENBANK|MN488624|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|QHB49092.1|GENBANK|MN488628|nucleocapsid protein [Human coronavirus NL63]
acc|GENBANK|QWO79054.1|GENBANK|MN535732|N protein [Bat coronavirus]
acc|GENBANK|QWO79066.1|GENBANK|MN535734|N protein [Bat coronavirus]
acc|GENBANK|QRN75106.1|NEIGHBOR|MW030108|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|QRN75112.1|NEIGHBOR|MW030109|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|QOP39318.1|GENBANK|MW039392|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|QZL09688.1|GENBANK|MZ577265|nucleoprotein [plateatu pika coronavirus P83]
acc|GENBANK|AIE16045.1|GENBANK|KF840559|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|AIE16046.1|GENBANK|KF840560|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|BAV31353.1|NEIGHBOR|LC119077|nucleocapsid protein [Ferret coronavirus]
acc|GENBANK|QLE11829.1|GENBANK|MT663548|nucleocapsid protein [Bat alphacoronavirus]
acc|GENBANK|ARI44792.1|GENBANK|KY770850|nucleocapsid protein [Bat coronavirus]
acc|GENBANK|QTE76076.1|NEIGHBOR|MW249018|nucleocapsid protein [Bat coronavirus]
acc|GENBANK|BAN67915.1|GENBANK|AB781789|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|QER90708.1|GENBANK|MN065811|nucleocapsid protein [Bat alphacoronavirus]
acc|GENBANK|APD51495.1|NEIGHBOR|KY073746|N protein [NL63-related bat coronavirus]
acc|GENBANK|APD51503.1|NEIGHBOR|KY073747|N protein [229E-related bat coronavirus]
acc|GENBANK|APD51511.1|NEIGHBOR|KY073748|N protein [229E-related bat coronavirus]
acc|GENBANK|QGX41949.1|GENBANK|MK472067|nucleocapsid [Alphacoronavirus sp.]
acc|GENBANK|QGX41961.1|GENBANK|MK472068|nucleocapsid [Alphacoronavirus sp.]
acc|GENBANK|QGX41967.1|GENBANK|MK472069|nucleocapsid [Alphacoronavirus sp.]
acc|GENBANK|QGX41955.1|GENBANK|MK472070|nucleocapsid [Alphacoronavirus sp.]
acc|GENBANK|QGX41973.1|GENBANK|MK472071|nucleocapsid [Alphacoronavirus sp.]
acc|GENBANK|UQH66245.1|GENBANK|MW718805|nucleocapsid protein [Canine coronavirus]
acc|GENBANK|UQH66170.1|GENBANK|MW722828|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|UQH66173.1|GENBANK|MW722831|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|AYR18404.1|GENBANK|MH687934|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|AYR18453.1|GENBANK|MH687942|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|AYR18509.1|GENBANK|MH687952|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|UNA01401.1|GENBANK|OM480510|nucleocapsid protein [Civet coronavirus HKU8]
acc|GENBANK|AHJ11039.1|GENBANK|KF898123|nucleocapsid [Porcine epidemic diarrhea virus]
acc|GENBANK|QOE77273.1|NEIGHBOR|MT820625|nucleocapsid phosphoprotein [Lucheng Rn rat coronavirus]
acc|GENBANK|QOE77282.1|NEIGHBOR|MT820626|nucleocapsid phosphoprotein [Lucheng Rn rat coronavirus]
acc|GENBANK|QOE77292.1|NEIGHBOR|MT820627|nucleocapsid phosphoprotein [Lucheng Rn rat coronavirus]
acc|GENBANK|ASF90463.1|NEIGHBOR|KY967723|nucleocapsid protein [Wencheng Sm shrew coronavirus]
acc|GENBANK|ASF90473.1|NEIGHBOR|KY967725|nucleocapsid protein [Wencheng Sm shrew coronavirus]
acc|GENBANK|ASF90489.1|NEIGHBOR|KY967733|nucleocapsid protein [Wencheng Sm shrew coronavirus]
acc|GENBANK|AEM44896.1|GENBANK|JF260915|nucleocapsid glycoprotein [Ferret coronavirus 4E98]
acc|GENBANK|UHL62021.1|GENBANK|OK655840|nucleocapsid phosphoprotein [Fievel mouse coronavirus]
acc|GENBANK|AOG74793.1|NEIGHBOR|KU291449|N [Camel alphacoronavirus Camel229E]
acc|GENBANK|AFJ54358.1|GENBANK|JQ723737|N protein [Porcine epidemic diarrhea virus]
acc|GENBANK|ACA52161.1|GENBANK|EU420137|nucleocapsid protein [Bat coronavirus 1B]
acc|GENBANK|AYP73643.1|NEIGHBOR|MG546689|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|ABE73420.1|GENBANK|DQ462763|nucleocapsid protein [Human coronavirus NL63]
acc|GENBANK|QPP46983.1|GENBANK|MW248736|nucleocapsid protein [Minacovirus mink/NLD/2020/NT_4]
acc|GENBANK|ADX59455.1|GENBANK|HQ728480|nucleocapsid protein [Cardioderma bat coronavirus/Kenya/KY43/2006]
acc|GENBANK|ADX59462.1|GENBANK|HQ728481|nucleocapsid protein [Chaerephon bat coronavirus/Kenya/KY41/2006]
acc|GENBANK|ADX59486.1|GENBANK|HQ728484|nucleocapsid protein [Miniopterus bat coronavirus/Kenya/KY27/2006]
acc|GENBANK|ADX59492.1|GENBANK|HQ728485|nucleocapsid protein [Miniopterus bat coronavirus/Kenya/KY33/2006]
acc|GENBANK|ADX59499.1|GENBANK|HQ728486|nucleocapsid protein [Chaerephon bat coronavirus/Kenya/KY22/2006]
acc|GENBANK|ASL24656.1|NEIGHBOR|KY799179|N protein [Myotis lucifugus coronavirus]
acc|GENBANK|QCX35164.1|GENBANK|MK720944|nucleocapsid protein [Tylonycteris bat coronavirus HKU33]
acc|GENBANK|QCX35174.1|GENBANK|MK720945|nucleocapsid protein [Rhinolophus bat coronavirus HKU32]
acc|GENBANK|QWN56277.1|GENBANK|MZ081383|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56287.1|GENBANK|MZ081384|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56330.1|GENBANK|MZ081388|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56338.1|GENBANK|MZ081389|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56346.1|GENBANK|MZ081390|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56354.1|GENBANK|MZ081391|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56363.1|GENBANK|MZ081392|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56398.1|GENBANK|MZ081396|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56405.1|GENBANK|MZ081397|nucleocapsid protein [Alphacoronavirus sp.]
acc|GENBANK|QWN56412.1|GENBANK|MZ081398|nucleocapsid protein [Alphacoronavirus sp.]
acc|REFSEQ|YP_009199794.1|REFSEQ|NC_028814|nucleocapsid protein [BtRf-AlphaCoV/HuB2013]
acc|REFSEQ|YP_009201734.1|REFSEQ|NC_028833|nucleocapsid protein [BtNv-AlphaCoV/SC2013]
acc|REFSEQ|YP_009199613.1|REFSEQ|NC_028811|nucleocapsid protein [BtMr-AlphaCoV/SAX2011]
acc|REFSEQ|YP_009328939.1|REFSEQ|NC_032107|N protein [NL63-related bat coronavirus]
acc|REFSEQ|YP_001718609.1|REFSEQ|NC_010437|nucleocapsid protein [Bat coronavirus 1A]
acc|REFSEQ|YP_009194643.1|REFSEQ|NC_028752|nucleocapsid protein [Camel alphacoronavirus]
acc|REFSEQ|YP_001718616.1|REFSEQ|NC_010438|nucleocapsid protein [Miniopterus bat coronavirus HKU8]
acc|REFSEQ|YP_006908646.1|REFSEQ|NC_018871|nucleocapsid protein [Rousettus bat coronavirus HKU10]
acc|REFSEQ|YP_009256201.1|REFSEQ|NC_030292|nucleocapsid protein [Ferret coronavirus]
acc|REFSEQ|YP_009755894.1|REFSEQ|NC_046964|nucleocapsid protein [Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015]
acc|GENBANK|ANF07130.1|GENBANK|KR265176|nucleocapsid protein [Canine coronavirus]
acc|GENBANK|ANF07131.1|GENBANK|KR265177|nucleocapsid protein [Canine coronavirus]
acc|GENBANK|ANF07140.1|GENBANK|KR265186|nucleocapsid protein [Canine coronavirus]
acc|GENBANK|ULR56680.1|GENBANK|OL956935|nucleocapsid protein [Bat alphacoronavirus]
acc|GENBANK|QBF53922.1|GENBANK|MH744253|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|QBF53929.1|GENBANK|MH744260|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|QBF53930.1|GENBANK|MH744261|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|AYF53099.1|GENBANK|MH817484|nucleoprotein [Feline alphacoronavirus 1]
acc|GENBANK|ANA96052.1|GENBANK|KU182966|nucleocapsid protein [Bat coronavirus]
acc|GENBANK|ATP66741.1|GENBANK|KY370045|nucleocapsid protein [Rodent coronavirus]
acc|GENBANK|ALK28779.1|NEIGHBOR|KT253269|N [229E-related bat coronavirus]
acc|GENBANK|ALK28791.1|NEIGHBOR|KT253271|N [229E-related bat coronavirus]
acc|GENBANK|ALK28797.1|NEIGHBOR|KT253272|N [229E-related bat coronavirus]
acc|GENBANK|AMM42528.1|GENBANK|KT359769|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|ASV51729.1|NEIGHBOR|MF577027|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|ADL71481.1|NEIGHBOR|HQ012370|nucleocapsid protein [Feline coronavirus UU24]
acc|GENBANK|URD31220.1|GENBANK|MZ293734|nucleocapsid protein [Myotis bat coronavirus]
acc|GENBANK|URD31227.1|GENBANK|MZ293735|nucleocapsid protein [Hipposideros bat coronavirus]
acc|GENBANK|URD31241.1|GENBANK|MZ293737|nucleocapsid protein [Pipistrellus bat coronavirus]
acc|GENBANK|URD31281.1|GENBANK|MZ293742|nucleocapsid protein [Hipposideros bat coronavirus]
acc|GENBANK|URD31298.1|GENBANK|MZ293744|nucleocapsid protein [Mimon bat coronavirus]
acc|GENBANK|URD31304.1|GENBANK|MZ293745|nucleocapsid protein [Megaderma bat coronavirus]
acc|GENBANK|URD31311.1|GENBANK|MZ293746|nucleocapsid protein [Megaderma bat coronavirus]
acc|GENBANK|UBB42451.1|GENBANK|MZ328299|nucleocapsid protein [Jingmen Miniopterus schreibersii alphacoronavirus 1]
acc|GENBANK|UBB42458.1|GENBANK|MZ328300|nucleocapsid protein [Jingmen Miniopterus schreibersii alphacoronavirus 2]
acc|GENBANK|AXE71626.1|NEIGHBOR|MG893511|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|QBP43274.1|NEIGHBOR|MG916902|N protein [Bat coronavirus]
acc|GENBANK|QBP43296.1|NEIGHBOR|MG916904|N protein [Bat coronavirus]
acc|GENBANK|QDE55569.1|GENBANK|MG923574|nucleocapsid protein [Bat alphacoronavirus]
acc|GENBANK|QVW10141.1|GENBANK|MZ218060|N protein [Bat coronavirus]
acc|GENBANK|AZF86122.1|GENBANK|MH938448|nucleocapsid protein [Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206645-41/2011]
acc|GENBANK|ACS44223.1|NEIGHBOR|GQ152141|N [Feline coronavirus]
acc|GENBANK|BAP75906.1|GENBANK|LC005736|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|BAS25714.1|GENBANK|LC029419|nucleocapsid protein [Ferret coronavirus]
acc|GENBANK|AFU92074.1|NEIGHBOR|JQ989266|nucleocapsid protein [Hipposideros bat coronavirus HKU10]
acc|GENBANK|QHA24669.1|GENBANK|MN611517|nucleocapsid protein [Rousettus aegyptiacus bat coronavirus 229E-related]
acc|GENBANK|QHA24700.1|GENBANK|MN611521|nucleocapsid protein [Scotophilus kuhlii bat coronavirus 512-related]
acc|GENBANK|QHA24707.1|GENBANK|MN611522|nucleocapsid protein [Rhinolophus affinis bat coronavirus HKU2-related]
acc|GENBANK|QHA24728.1|GENBANK|MN611525|nucleocapsid protein [Hipposideros pomona bat coronavirus CHB25]
acc|GENBANK|ULB12912.1|GENBANK|OM000350|nucleocapsid protein [Mops condylurus alphacoronavirus]
acc|GENBANK|UOL48891.1|GENBANK|OM030318|nucleocapsid protein [Jingmen Myotis ricketti alphacoronavirus 1]
acc|GENBANK|ADR79375.1|GENBANK|HQ585082|nucleocapsid [Alphacoronavirus Eptesicus fuscus/Appalachian]
acc|GENBANK|ACR10356.1|GENBANK|FJ917527|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|ACT10882.1|NEIGHBOR|FJ938053|nucleocapsid protein [Feline coronavirus UU7]
acc|GENBANK|QED40655.1|NEIGHBOR|MK841494|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|URN46051.1|GENBANK|ON597860|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|URN46056.1|GENBANK|ON597861|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|URN46061.1|GENBANK|ON597862|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|URN46066.1|GENBANK|ON597863|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|AUG98084.1|GENBANK|KY566176|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|AUG98106.1|GENBANK|KY566198|nucleocapsid protein [Feline coronavirus]
acc|GENBANK|ABG75578.1|GENBANK|DQ666343|nucleocapsid [Bat coronavirus HKU7]
acc|GENBANK|UQE85389.1|GENBANK|MW356787|N protein [raccoon dog coronavirus]
acc|GENBANK|ANN12606.1|GENBANK|KX255651|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|ANN12607.1|GENBANK|KX268229|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|AAS68177.1|GENBANK|AY539715|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|AAS98733.1|GENBANK|AY563107|nucleocapsid protein [Human coronavirus 3363/2000/NL]
acc|GENBANK|QXT58306.1|GENBANK|MW122480|N protein [Porcine epidemic diarrhea virus]
acc|GENBANK|AJD09530.1|GENBANK|KJ857407|nucleocapsid protein [Porcine epidemic diarrhea virus]
acc|GENBANK|ADO39823.1|NEIGHBOR|HQ392469|nucleocapsid protein [Feline coronavirus UU40]
acc|GENBANK|QDH43732.1|GENBANK|MN026166|nucleocapsid protein [Human coronavirus NL63]
acc|GENBANK|UBX89773.1|GENBANK|MW558579|N protein [Feline coronavirus]
acc|GENBANK|UBX89774.1|GENBANK|MW558580|N protein [Feline coronavirus]
acc|GENBANK|UBX89776.1|GENBANK|MW558582|N protein [Feline coronavirus]
acc|GENBANK|QVL91817.1|GENBANK|MW591993|nucleocapsid phosphoprotein [Canine coronavirus]
acc|GENBANK|ALA50169.1|NEIGHBOR|KT368903|nucleocapsid protein [Camel alphacoronavirus]
acc|GENBANK|UNE74445.1|GENBANK|OL410607|N protein [Eptesicus bat coronavirus]
acc|GENBANK|UIG55616.1|GENBANK|OL807608|nucleocapsid protein [Afronycteris nana bat alphacoronavirus/Bat77/Eswatini/2014]
acc|GENBANK|UIG55619.1|GENBANK|OL807609|nucleocapsid protein [Chaerephon pumilus bat alphacoronavirus/Bat143/Eswatini/2014]
acc|GENBANK|UIG55627.1|GENBANK|OL807611|nucleocapsid protein [Chaerephon pumilus bat alphacoronavirus/Bat180/Eswatini/2014]
acc|GENBANK|AGW80680.1|GENBANK|KF293662|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|QEO75989.1|NEIGHBOR|MN369046|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|BCF74526.1|GENBANK|LC543620|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|BCF74527.1|GENBANK|LC543621|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|ACN78944.1|GENBANK|FJ710056|nucleoprotein [Bat coronavirus Hipposideros/GhanaKwam/19/2008]
acc|GENBANK|QXF78499.1|GENBANK|MT492212|nucleocapsid protein [Human coronavirus 229E]
acc|GENBANK|UED13291.1|GENBANK|MW924112|nucleocapsid [Alphacoronavirus HCQD-2020]
acc|GENBANK|QBG64642.1|GENBANK|MK249068|nucleocapsid [Alphacoronavirus PLMg1]
acc|GENBANK|QBG64652.1|GENBANK|MK249069|nucleocapsid [Alphacoronavirus UKMa1]
